Publications

This section includes a list of the latest IPNA scientific articles published in journals included in the Science Citation Index (SCI).

In DIGITAL.CSIC, institutional repository of the CSIC, you can find the complete list of scientific articles since 1962, as well as other collections of interest such as congresses, theses, books, informative material, etc. of the centre. The aim of DIGITAL.CSIC is to organize, preserve and disseminate in open access the results of our research.

In the institutional repository of the CSIC, you can find the complete list of scientific articles, as well as other collections of interest such as congresses, theses, books, informative material, etc.

Go to Digital - CSIC

 

Analysis of the IPNA 2014-2019 Scientific Production: bibliometric analysis from data collected in Scopus and Web of Science.

 

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Digital CSIC

Translational aspect in peptide drug discovery and development: An emerging therapeutic candidate

In the last two decades, protein–protein interactions (PPIs) have been used as the main target for drug development. However, with larger or superficial binding sites, it has been extremely difficult to disrupt PPIs with small molecules. On the other hand, intracellular PPIs cannot be targeted by antibodies that cannot penetrate the cell membrane. Peptides that have a combination of conformational rigidity and flexibility can be used to target difficult binding interfaces with appropriate binding affinity and specificity. Since the introduction of insulin nearly a century ago, more than 80 peptide drugs have been approved to treat a variety of diseases. These include deadly diseases such as cancer and human immunodeficiency virus infection. It is also useful against diabetes, chronic pain, and osteoporosis. Today, more research is being done on these drugs as lessons learned from earlier approaches, which are still valid today, complement newer approaches such as peptide display libraries. At the same time, integrated genomics and peptide display libraries are new strategies that open new avenues for peptide drug discovery. The purpose of this review is to examine the problems in elucidating the peptide-protein recognition mechanism. This is important to develop peptide-based interventions that interfere with endogenous protein interactions. New approaches are being developed to improve the binding affinity and specificity of existing approaches and to develop peptide agents as potentially useful drugs. We also highlight the key challenges that must be overcome in peptide drug development to realize their potential and provide an overview of recent trends in peptide drug development. In addition, we take an in-depth look at early efforts in human hormone discovery, smart medicinal chemistry and design, natural peptide drugs, and breakthrough advances in molecular biology and peptide chemistry.

Anand, Uttpal; Bandyopadhyay, Anustup; Jha, Niraj K.; Pérez de Lastra, José Manuel; Dey, Abhijit

Biofactors 1-19 (2022)
DOIDigital.CSIC

Coupling phenotypic changes to extinction and survival in an endemic prey community threatened by an invasive snake

When facing novel invasive predators, native prey can either go extinct or survive through exaptation or phenotypic shifts (either plastic or adaptive). Native prey can also reflect stress-mediated responses against invasive predators, affecting their body condition. Although multiple native prey are likely to present both types of responses against a single invader, community-level studies are infrequent. The invasive California kingsnake (Lampropeltis californiae) a good example to explore invasive predators’ effects on morphology and body condition at a community level, as this invader is known to locally extinct the Gran Canaria giant lizard (Gallotia stehlini) and to notably reduce the numbers of the Gran Canaria skink (Chalcides sexlineatus) and the Boettger’s gecko (Tarentola boettgeri). By comparing a set of morphological traits and body condition (i.e. body index and ectoparasite load) between invaded and uninvaded areas for the three squamates, we found clear evidence of a link between a lack of phenotypic change and extinction, as G. stehlini was the single native prey that did not show morphological shifts. On the other side, surviving C. sexlineatus and T. boettgeri exhibited phenotypic differences in several morphological traits that could reflect plastic responses that contribute to their capacity to cope with the snake. Body condition responses varied among species, indicating the potential existence of simultaneous consumptive and non-consumptive effects at a community level. Our study further highlights the importance addressing the impact of invasive predators from a community perspective in order to gain a deeper understanding of their effect in native ecosystems.

Piquet, Julien C.; Maestresalas, Borja; López-Darias, Marta.

Scientific reports, 12, 18249: 1-10 (2022)
DOIDigital.CSIC

Traditional uses, phytochemistry, pharmacology and toxicology of garlic (Allium sativum), a storehouse of diverse phytochemicals: A review of research from the last decade focusing on health and nutritional implications

Allium sativum L. (Garlic) is a fragrant herb and tuber-derived spice that is one of the most sought-after botanicals, used as a culinary and ethnomedicine for a variety of diseases around the world. An array of pharmacological attributes such as antioxidant, hypoglycemic, anti-inflammatory, antihyperlipidemic, anticancer, antimicrobial, and hepatoprotective activities of this species have been established by previous studies. A. sativum houses many sulfur-containing phytochemical compounds such as allicin, diallyl disulfide (DADS), vinyldithiins, ajoenes (E-ajoene, Z-ajoene), diallyl trisulfide (DATS), micronutrient selenium (Se) etc. Organosulfur compounds are correlated with modulations in its antioxidant properties. The garlic compounds have also been recorded as promising immune-boosters or act as potent immunostimulants. A. sativum helps to treat cardiovascular ailments, neoplastic growth, rheumatism, diabetes, intestinal worms, flatulence, colic, dysentery, liver diseases, facial paralysis, tuberculosis, bronchitis, high blood pressure, and several other diseases. The present review aims to comprehensively enumerate the ethnobotanical and pharmacological aspects of A. sativum with notes on its phytochemistry, ethnopharmacology, toxicological aspects, and clinical studies from the retrieved literature from the last decade with notes on recent breakthroughs and bottlenecks. Future directions related to garlic research is also discussed.

Tudu, Champa Keeya; Dutta, Tusheema; Ghorai, Mimosa; Biswas, Protha; Samanta, Dipu; Oleksak, Patrik; Jha, Niraj K.; Kumar, Manoj; Radha; Proćków, Jarosław; Pérez de Lastra, José Manuel; Dey, Abhijit.

Frontiers in Nutrition 9: 949554 (2022)
DOIDigital.CSIC

Regio- and Stereoselectivity of the Norrish–Yang Photocyclization of Dialkyl 1,2-Diketones: Solution versus Solid State Photochemistry of Two Polymorphs

As shown by X-ray crystallography, crystals of 3β-acetoxy-16,17-seco-17,20-dioxopregn-5-ene-16-nitrile are dimorphic. The regioselectivity of the Norrish–Yang type II photocyclization under visible light of this steroidal 1,2-diketone, which bears primary, secondary, and tertiary nonequivalent abstractable γ-hydrogens, dramatically increases in the crystalline state of both polymorphs. X-ray crystallography and molecular mechanics calculations reveal crystal structure–solid state photochemistry relationships.

Álvarez-Dorta, Dimitri; León, Elisa I.; Martín, Ángeles; Kennedy, Alan R.; Pérez-Martín, Inés; Shankland, Kenneth; Suárez, Ernesto.

Journal of Organic Chemistry, 87(21), 14940–14947, 1-8 (2022)
DOIDigital.CSIC

Volatile composition of light red wines aged in Canary pine barrels from La Palma (Canary Islands, Spain)

Multivarietal wines aged in barrels made from the resinous heartwood of the Canary Pine (Vinos de Tea) in La Palma (Canary Islands, Spain) were analysed, together with a control sample and a Greek Retsina wine. The concentrations of various families of varietal and fermentative volatile compounds were determined by gas chromatography and mass spectrometry. Results showed the significant presence of the terpene family, especially terpinen-4-ol and α-terpineol (probably derived from contact with the resinous wood of the barrels), regardless of grape variety. Samples taken from commercial wineries presented significantly lower concentrations of α-terpineol than samples from traditional artisan producers. The principal component analysis clearly differentiated both from the Retsina. It also revealed a correlation between the length of time that wine aged in Canary pine barrels and a sharp increase in α-terpineol, which can be considered a marker of the typicity of these unique traditional wines on the verge of disappearance.

Alonso-González, Pablo; Parga-Dans, Eva; Ballester, Jordi.

OENO One, 56(4) : 29-40 (2022)
DOIDigital.CSIC

The Role of Reactive Species on Innate Immunity

This review examines the role of reactive species RS (of oxygen ROS, nitrogen RNS and halogen RHS) on innate immunity. The importance of these species in innate immunity was first recognized in phagocytes that underwent a “respiratory burst” after activation. The anion superoxide O2 􀀀 and hydrogen peroxide H2O2 are detrimental to the microbial population. NADPH oxidase NOx, as an O2 􀀀 producer is essential for microbial destruction, and patients lacking this functional oxidase are more susceptible to microbial infections. Reactive nitrogen species RNS (the most important are nitric oxide radical - NO, peroxynitrite ONOO— and its derivatives), are also harmful to microorganisms, including bacteria, viruses, and parasites. Hypochlorous acid HOCl and hypothiocyanous acid HOSCN synthesized through the enzyme myeloperoxidase MPO, which catalyzes the reaction between H2O2 and Cl􀀀 or SCN􀀀, are important inorganic bactericidal molecules, effective against a wide range of microbes. This review also discusses the role of antimicrobial peptides AMPs and their induction of ROS. In summary, reactive species RS are the heart of the innate immune system, and they are necessary for microbial lysis in infections that can affect mammals throughout their lives.

Curieses Andrés, Celia María; Pérez de Lastra, José Manuel ; Andrés Juan, Celia; Plou Gasca, Francisco José; Pérez-Lebeña, Eduardo.

Vaccines 10(10): 1735 (2022)
DOIDigital.CSIC

Genome editing technologies, mechanisms and improved production of therapeutic phytochemicals: Opportunities and prospects

Plants produce a large number of secondary metabolites, known as phytometabolites that may be employed as medicines, dyes, poisons, and insecticides in the field of medicine, agriculture, and industrial use, respectively. The rise of genome management approaches has promised a factual revolution in genetic engineering. Targeted genome editing in living entities permits the understanding of the biological systems very clearly, and also sanctions to address a wide-ranging objective in the direction of improving features of plant and their yields. The last few years have introduced a number of unique genome editing systems, including transcription activator-like effector nucleases, zinc finger nucleases, and miRNA-regulated clustered regularly interspaced short palindromic repeats/Cas9 (CRISPR/Cas9). Genome editing systems have helped in the transformation of metabolic engineering, allowing researchers to modify biosynthetic pathways of different secondary metabolites. Given the growing relevance of editing genomes in plant research, the exciting novel methods are briefly reviewed in this chapter. Also, this chapter highlights recent discoveries on the CRISPR-based modification of natural products in different medicinal plants.

Mitra, Sicon; Anand, Uttpal; Ghorai, Mimosa; Kant, Nishi; Kumar, Manoj; Radha; Jha, Niraj K.; Swamy, Mallappa K.; Proćków, Jarosław; Pérez de Lastra, José Manuel; Dey, Abhijit.

Biotechnology and Bioengineering (2022)
DOIDigital.CSIC

Microclimatic variation in tropical canopies: A glimpse into the processes of community assembly in epiphytic bryophyte communities

1. Epiphytic communities offer an original framework to disentangle the contributions of environmental filters, biotic interactions and dispersal limitations to community structure at fine spatial scales. We determine here whether variations in light, microclimatic conditions and host tree size affect the variation in species composition and phylogenetic structure of epiphytic bryophyte communities, and hence, assess the contribution of environmental filtering, phylogenetic constraints and competition to community assembly. 2. A canopy crane giving access to 1.1 ha of tropical rainforest in Yunnan (China) was employed to record hourly light and microclimatic conditions from 54 dataloggers and epiphytic bryophyte communities from 408 plots. Generalized Dissimilarity Modelling was implemented to analyse the relationship between taxonomic and phylogenetic turnover among epiphytic communities, host-tree characteristics and microclimatic variation. 3. Within-tree vertical turnover of bryophyte communities was significantly about 30% higher than horizontal turnover among-trees. Thus, the sharp vertical variations in microclimatic conditions from tree base to canopy are more important than differences in age, reflecting the likelihood of colonization, area, and habitat conditions between young and old trees, in shaping the composition of epiphytic bryophyte communities. 4. Our models, to which microclimatic factors contributed most (83–98%), accounted for 33% and 18% of the variation in vertical turnover in mosses and liverworts, respectively. Phylogenetic turnover shifted from significantly negative or non-significant within communities to significantly positive among communities, and was slightly, but significantly, correlated with microclimatic variation. These patterns highlight the crucial role of microclimates in determining the composition and phylogenetic structure of epiphytic communities. 5. Synthesis. The mostly non-significant phylogenetic turnover observed within communities does not support the idea that competition plays an important role in epiphytic bryophytes. Instead, microclimatic variation is the main driver of community composition and phylogenetic structure, evidencing the role of phylogenetic niche conservatism in community assembly.

Ting Shen; Corlett, Richard T.; Collart, Flavien; Kasprzyk, Thibault; Xin-Lei Guo; Patiño, Jairo; Yang Su; Hardy, Olivier J.; Wen-Zhang Ma; Jian Wang; Yu-Mei Wei; Mouton, Lea; Yuan Li; Liang Song; Vanderpoorten, Alain.

Journal of Ecology, 110(12): 3023-3038 (2022)
DOIDigital.CSIC

Alciporin, a pore-forming protein as complementary defense mechanism in Millepora alcicornis

Millepora alcicornis (Cnidaria: Hydrozoa), known as fire coral, is a tropical species settled in marine ecosystems of the Canary Islands in the last years. This hydrocoral biosynthesizes toxins involved in chemical defense and prey capture mechanisms. Toxicological studies have shown that the venom contained in the nematocysts of Millepora species is mainly composed of thermolabile proteins that display hemolytic activity, causing skin irritation and burn-like lesions upon contact. As a continuation of a previous study, the chromatographic fractionation of the aqueous extracts of M. alcicornis has confirmed the coexistence of proteins of different nature responsible for the hemolytic effects of red blood cells (RBCs) through two different mechanisms. Aside from the already described phospholipase A2 (PLA2) activity, in this work the presence of alciporin, a pore-forming protein (PFP), has been established for the first time for M. alcicornis. The sequence analysis revealed that alciporin fit an actinoporin with high homology to stichotoxins. The hemolytic effects of alciporin were analyzed and sphingomyelin was identified as its biological target. Also, the evolution of the hemolytic damage produced at the nanoscale has been studied using atomic force microscopy (AFM).

Nocchi, Nathalia; González-Orive, Alejandro; Hernández-Creus, Alberto; Lorenzo-Morales, Jacob; Rodríguez, Adriana; Morchón, Rodrigo; Díaz-Marrero, Ana R.; Fernández, José J.

Front. Mar. Sci, 9:914084: 1-15 (2022)
DOIDigital.CSIC

Nearly Three Centuries of Lava Flow Subsidence at Timanfaya, Lanzarote

The 1730–1736 eruption on Lanzarote was one of the most significant volcanic eruptions to occur on the Canary Islands, with lavas covering over 200 km 2. Globally, it is volumetrically the third largest known subaerial basaltic fissure eruption in the past 1,100 years. Here we use Sentinel-1 and ENVISAT interferograms on both ascending and descending orbits to construct a time series of line-of-sight surface displacements and calculate linear vertical deformation rates. We resolve a constant subsidence rate of about 6 mm/yr associated with an area of ∼20 km 2 within the central and western portion of the Timanfaya lava flows relative to the rest of the island. This is consistent over the 28-year period (1992–2020) covered by the Sentinel-1 and ENVISAT data when combined with the previously published European Remote-Sensing Satellite data. Time series constructed using Sentinel-1 short interval interferograms have previously been shown to suffer systematic biases and we find that by making longer period interferograms these biases can be mitigated (when compared against an averaged stack of 1-year interferograms). Cooling-driven contraction of an intrusion would require improbably large sill thickness to achieve the observed subsidence rates. Our observations are consistent with the cooling of lavas on the order of one hundred meters, twice as thick as previous estimates, which suggests overall lava volume for this eruption may have been underestimated. This is also evidence of the longest duration of lava flow subsidence ever imaged which indicates that these cumulative thick flows can continue to deform significantly even three centuries after emplacement.

Purcell, Victoria; Reddin, Eoin; Ebmeier, Susanna; González, Pablo J.; Watson, Andrew; Morishita, Yu; Elliott, John.

Geochemistry, Geophysics, Geosystems, 23(10): 1-35 (2022)
DOIDigital.CSIC