Dispersal ability and niche breadth influence interspecific variation in spider abundance and occupancy

The relationship between species local abundance and their regional distribution (occupancy) is one of the most extensively recognized and investigated patterns in ecology. While exceptions exist, the generally held model is that locally abundant species also tend to be more widespread geographically. However, there is only a limited understanding of both the mechanisms driving this relationship, and their scale dependency. Here we use occupancy and abundance data for 123 species of spider from across the Canary Islands to understand how both dispersal ability and niche breadth might mediate variation among species for local abundance and occupancy. We test the predictions that (i) dispersal ability explains variation among species for both abundance and occupancy, and (ii) species with a higher degree of habitat specialization, reflecting more limited niche breadth, will have both higher occupancy and abundance. We find no evidence within habitat patches for an effect of dispersal ability on either local abundance or site occupancy, while across all patches species with higher dispersal ability tend to occupy more sites. Species largely restricted to laurel forests have higher abundance than species with broader niche breadth, but similar occupancy. The study revealed that dispersal ability and niche breadth were significant predictors of the abundance–occupancy relationship, highlighting the importance of both factors for understanding patterns of abundance and occupancy among spider species.

Suárez, Daniel; Arribas, Paula; Macías-Hernández, Nuria; Emerson, Brent C.

Royal Society Open Science, 10(5): 1-15 (2023)
DOIDigital.CSIC

A Certification for Natural Wine? A Comparative Analysis of Consumer Drivers in Italy and Spain

The 2020 certification of natural wine (NW) in France has unleashed a heated debate in Europe. However, knowledge about NW consumer profiles and preferences in a comparative perspective remains scarce in the academic literature. This study aims to define the perceptions, preferences and profiles of wine consumers who support a NW label. For this purpose, we employed analysis of variance, aprioristic factor analysis and multiple regression analysis to examine data from a direct survey performed in Italy and Spain in 2020. Findings reveal that NW consumers in both countries deem it necessary to establish a certification for NW. However, we found significant differences regarding consumers’ profiles, as well as purchasing preferences. In Spain, demand for NW certification is linked to eco-healthy and proximity-craft attributes of wine, and is considered more important by non-professional consumers and those with lower educational level. In Italy, information on the label and the purchase experience are the most important factors to aid in recognizing NW, while women show a significant interest in the NW certification. These findings may help policy-makers to establish homogeneous parameters to differentiate and certify NW.

Parga-Dans, Eva; Vecchio, Riccardo; Annunziata, Azzurra; Alonso-González, Pablo; Otero Enríquez, Raimundo.

Wine economics and policy : 1-23 (2023)
DOIDigital.CSIC

Teleost Piscidins—In Silico Perspective of Natural Peptide Antibiotics from Marine Sources

Fish, like all other animals, are exposed to constant contact with microbes, both on their skin and on the surfaces of their respiratory and digestive systems. Fish have a system of non-specific immune responses that provides them with initial protection against infection and allows them to survive under normal conditions despite the presence of these potential invaders. However, fish are less protected against invading diseases than other marine vertebrates because their epidermal surface, composed primarily of living cells, lacks the keratinized skin that serves as an efficient natural barrier in other marine vertebrates. Antimicrobial peptides (AMPs) are one type of innate immune protection present in all life forms. AMPs have been shown to have a broader range of biological effects than conventional antibiotics, including antibacterial, antiviral, antiprotozoal, and antifungal effects. Although other AMPs, such as defensins and hepcidins, are found in all vertebrates and are relatively well conserved, piscidins are found exclusively in Teleost fish and are not found in any other animal. Therefore, there is less information on the expression and bioactivity of piscidins than on other AMPs. Piscidins are highly effective against Gram-positive and Gram-negative bacteria that cause disease in fish and humans and have the potential to be used as pharmacological anti-infectives in biomedicine and aquaculture. To better understand the potential benefits and limitations of using these peptides as therapeutic agents, we are conducting a comprehensive study of the Teleost piscidins included in the “reviewed” category of the UniProt database using bioinformatics tools. They all have amphipathic alpha-helical structures. The amphipathic architecture of piscidin peptides and positively charged residues influence their antibacterial activity. These alpha-helices are intriguing antimicrobial drugs due to their stability in high-salt and metal environments. New treatments for multidrug-resistant bacteria, cancer, and inflammation may be inspired by piscidin peptides.

Asensio-Calavia, Patricia; González-Acosta, Sergio; Otazo-Pérez, Andrea; López, Manuel R.; Morales-delaNuez, Antonio; Pérez de Lastra, José Manuel.

Antibiotics 12(5), 855: 1-26 (2023)
DOIDigital.CSIC

Recirculating packed-bed biofilm photobioreactor combined with membrane ultrafiltration as advanced wastewater treatment

Packed-bed biofilm photobioreactor combined with ultrafiltration membrane was investigated for intensifying the process for secondary wastewater effluent treatment. Cylindrical glass carriers were used as supporting material for the microalgal-bacterial biofilm, which developed from indigenous microbial consortium. Glass carriers allowed adequate growth of the biofilm with limited suspended biomass. Stable operation was achieved after a start-up period of 1000 h, where supernatant biopolymer clusters were minimized and complete nitrification was observed. After that time, biomass productivity was 54 ± 18 mg·L−1·day−1. Green microalgae Tetradesmus obliquus and several strains of heterotrophic nitrification–aerobic denitrification bacteria and fungi were identified. Combined process exhibited COD, nitrogen and phosphorus removal rates of 56 ± 5%, 12 ± 2% and 20 ± 6%, respectively. Membrane fouling was mainly caused by biofilm formation, which was not effectively mitigated by air-scouring aided backwashing.

Díaz, Oliver; González, Enrique; Vera, Luisa; Fernández, Luis Javier; DIAZ MARRERO, ANA RAQUEL ; Fernández, José J.

Environmental Science and Pollution Research: 1-14 (2023)
DOIDigital.CSIC

Materia, vida y sociedad: Investigaciones del Instituto de Productos Naturales y Agrobiología

El artículo hace referencia a los objetivos y actividades, así como el papel científico que desempeña, el Instituto de Productos Naturales y Agrobiología (IPNA), institución que es una rareza entre los 121 centros que forman parte del Consejo Superior de Investigaciones Científicas (CSIC). Y lo es por varios motivos. El más evidente es su lejanía del continente y el hecho de que hasta 2022 fuera el único representante del CSIC en Canarias, algo que cambió con la incorporación del IEO y el IGME a la red. Esta circunstancia quizás sea la explicación de que en el IPNA se desarrollen estudios sobre las tres áreas claves del conocimiento: materia, vida y sociedad, las cuales se abordan y describen en el presente artículo, así como el impacto científico de este organismo, y los retos que afronta para el futuro.

Padrón, Juan I.; Pérez-Martín, Inés; Pérez Pérez, Beatriz.

Encuentros multidisciplinares, 73: 1-7 (2023)
Digital.CSIC

Towards understanding insect species introduction and establishment: A community-level barcoding approach using island beetles

Since Darwin put forward his opposing hypotheses to explain the successful establishment of species in areas outside their native ranges, the preadaptation and competition-relatedness hypotheses, known as Darwin's naturalization conundrum, numerous studies have sought to understand the relative importance of each. Here, we take advantage of well-characterized beetle communities across laurel forests of the Canary Islands for a first evaluation of the relative support for Darwin's two hypotheses within arthropods. We generated a mitogenome backbone tree comprising nearly half of the beetle genera recorded within the Canary Islands for the phylogenetic placement of native and introduced species sampled in laurel forests, using cytochrome c oxidase I (COI) sequences. For comparative purposes, we also assembled and phylogenetically placed a data set of COI sequences for introduced beetle species that were not sampled within laurel forests. Our results suggest a stronger effect of species preadaptation over resource competition, while also revealing an underappreciated shortfall in arthropod biodiversity data—knowledge of species as being native or introduced. We name this the Humboldtean shortfall and suggest that similar studies using arthropods should incorporate DNA barcode sequencing to mitigate this problem.

Jiménez-García, Eduardo; Andújar, Carmelo; Emerson, Brent C.

Molecular Ecology, 32(13): 1-15 (2023)
DOIDigital.CSIC

Harnessing and bioprospecting botanical-based herbal medicines against potential drug targets for COVID-19: a review coupled molecular docking studies

Since the end of February 2020, the world has come to a standstill due to the virus SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2). Since then, the global scientific community has explored various remedies and treatments against this virus, including natural products that have always been a choice because of their many benefits. Various known phytochemicals are well documented for their antiviral properties. Research is being carried out to discover new natural plant products or existing ones as a treatment measure for this disease. The three important targets in this regard are—papain like protease (PLpro), spike protein, and 3 chymotrypsin like proteases (3CLpro). Various docking studies are also being elucidated to identify the phytochemicals that modulate crucial proteins of the virus. The paper is simultaneously a comprehensive review that covers recent advances in the domain of the effect of various botanically derived natural products as an alternative treatment approach against Coronavirus Disease 2019 (COVID-19). Furthermore, the docking analyses revealed that rutin (inhibitor of the major protease of SARS-CoV-2), gallocatechin (e.g., interacting with 03 hydrogen bonds with a spike-like protein), lycorine (showing the best binding affinity with amino acids GLN498, THR500 and GLY446 of the spike-like protein), and quercetrin (inhabiting at its residues ASP216, PHE219, and ILE259) are promising inhibitors of SARS‑CoV‑2.

Pal, Tarun; Anand, Uttpal; Mitrab, Shreya Sikdar; Biswasb, Protha; Tripathic, Vijay; Proćkówd, Jarosław; Deyb, Abhijit; Pérez de Lastra, José Manuel.

Journal of Biomolecular Structure and Dynamics: 1-23 (2023)
DOIDigital.CSIC

Consumption of the lichen Roccella Gracilis by the large ground-finch Geospiza Magnirostris on the island of Daphne Major (Galápagos)

This note reports a trophic interaction of a passerine consuming lichens. On the islet of Daphne Major (Galápagos Archipelago), we made five observations of the Large Ground-Finch Geospiza magnirostris eating the fruticose lichen Roccella gracilis. This is an example of how island birds broaden their feeding niche in resource-poor environments.

Manuel Nogales, Sandra Hervías-Parejo.

Ornitología Neotropical, 34(1): 1-2 (2023)
DOIDigital.CSIC

Spatial ecology to strengthen invasive snake management on islands

Knowledge on the spatial ecology of invasive predators positively contributes to optimizing their management, especially when involving cryptic and secretive species, such as snakes. However, this information is lacking for most invasive snakes, particularly on islands, where they are known to cause severe ecological and socio-economic impacts. This research is focused on assessing the spatial ecology of the California kingsnake (Lampropeltis californiae) on Gran Canaria to strengthen management actions. We monitored 15 radio-tagged individuals once per day on 9–11 days per month from July 2020 to June 2021 to calculate the species' home range and describe annual activity patterns in the invaded range. To account for the species' diel activity during the emergence period, we additionally monitored snakes from January to May 2021 during three consecutive days per month in four different time intervals each day. We detected movement (consecutive detections at least 6 m apart) in 31.68% of the 1146 detections during the whole monitoring period. Movements most frequently detected were shorter than 100 m (82.24%), and among them the range 0–20 m was the most recurrent (27.03%). The mean distance of movement was 62.57 ± 62.62 m in 1–2 days. Average home range was 4.27 ± 5.35 ha—calculated with the Autocorrelated Kernel Density Estimator (AKDE) at 95%—and did not significantly vary with SVL nor sex. We detected an extremely low value of motion variance (0.76 ± 2.62 σ2m) compared to other studies, with a general inactivity period from November to February, January being the less active month of the year. Diel activity was higher during central and evening hours than during early morning and night. Our results should be useful to improve control programs for this invasive snake (e.g., trap placement and visual survey guidance) on Gran Canaria. Our research highlights the importance of gathering spatial information on invasive snakes to enhance control actions, which can contribute to the management of secretive invasive snakes worldwide.

Maestresalas, Borja; Piquet, Julien C.; López-Darias, Marta.

Scientific Reports, 13, 6731: 1-12 (2023)
DOIDigital.CSIC

Combined direct-sun ultraviolet and infrared spectroscopies at Popocatépetl volcano (Mexico)

Volcanic plume composition is strongly influenced by both changes in magmatic systems and plume-atmosphere interactions. Understanding the degassing mechanisms controlling the type of volcanic activity implies deciphering the contributions of magmatic gases reaching the surface and their posterior chemical transformations in contact with the atmosphere. Remote sensing techniques based on direct solar absorption spectroscopy provide valuable information about most of the emitted magmatic gases but also on gas species formed and converted within the plumes. In this study, we explore the procedures, performances and benefits of combining two direct solar absorption techniques, high resolution Fourier Transform Infrared Spectroscopy (FTIR) and Ultraviolet Differential Optical Absorption Spectroscopy (UV-DOAS), to observe the composition changes in the Popocatépetl’s plume with high temporal resolution. The SO2 vertical columns obtained from three instruments (DOAS, high resolution FTIR and Pandora) were found similar (median difference <12%) after their intercalibration. We combined them to determine with high temporal resolution the different hydrogen halide and halogen species to sulfur ratios (HF/SO2, BrO/SO2, HCl/SO2, SiF4/SO2, detection limit of HBr/SO2) and HCl/BrO in the Popocatépetl’s plume over a 2.5-years period (2017 to mid-2019). BrO/SO2, BrO/HCl, and HCl/SO2 ratios were found in the range of (0.63 ± 0.06 to 1.14 ± 0.20) × 10−4, (2.6 ± 0.5 to 6.9 ± 2.6) × 10−4, and 0.08 ± 0.01 to 0.21 ± 0.01 respectively, while the SiF4/SO2 and HF/SO2 ratios were found fairly constant at (1.56 ± 0.25) × 10−3 and 0.049 ± 0.001. We especially focused on the full growth/destruction cycle of the most voluminous lava dome of the period that took place between February and April 2019. A decrease of the HCl/SO2 ratio was observed with the decrease of the extrusive activity. Furthermore, the short-term variability of BrO/SO2 is measured for the first time at Popocatépetl volcano together with HCl/SO2, revealing different behaviors with respect to the volcanic activity. More generally, providing such temporally resolved and near-real-time time series of both primary and secondary volcanic gaseous species is critical for the management of volcanic emergencies, as well as for the understanding of the volcanic degassing processes and their impact on the atmospheric chemistry.

Taquet, N.; Rivera Cárdenas, C.; Stremme, W.; Boulesteix, Thomas; Bezanilla, A.; Grutter, M.; García, O.; Hase, F.; Blumenstock, T.

Frontiers in Earth Science, 11: 1-18 (2023)
DOIDigital.CSIC